Biological Modeling Club

Seminar Series in BioMathematical Methodology

Stanford biomodeling seminars bring together local researchers and guest lecturers to discuss their work in various aspects of biological modeling and mathematical/computational biology. Seminars are informal and interactive.

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Upcoming Seminars



Past Seminars

A Microfluidic System for Generating Massively Partitioned and Barcoded DNA Sequencing Libraries

Tuesday, December 8, 2015 at 3:00pm (Clark, Room S360)
IMichael Schnall-Levin, Director of Informatics at 10X

Large scale machine learning for drug discovery

Wednesday, August 5, 2015 at 3:00pm (Clark, Room S362)
Bharath Ramsundar, Stanford University

An Integrative Pan-TCGA Analysis for Clinically Relevant Genomic/proteomic Alterations and Targeted Therapeutic Prediction

Tuesday July 14, 2015 at 3:00pm (Clark, Room S363)
HoJoon Lee, Stanford University

Prognostication of Early Stage Breast Cancer from Digital Immunohistochemistical Slides

Tuesday June 23, 2015 at 3:00pm (Clark, Room S363)
David Knowles, Stanford University

Nonlinear Feature Selection for large and Ultra High-dimensional Data

Friday May 15, 2015 at 3:00pm (Clark, Room S361)
Makoto Yamada, Yahoo, Inc.

Probing Networks to Understand Nature

Wednesday October 8, 2014 at 2:00 PM (Li Ka Shing Center, Room 203/204)
Leonid Chindelevitch, Postdoctoral Fellow, Harvard School of Public Health

Visualization of high-dimensional data using dimensionality reduction

Monday November 18th at 3 pm (Li Ka Shing Center Room LK305)
Max Vladymyrov, Electrical Engineering and Computer Science, UC Merced

Structure and Regularization

Tuesday March 19th at 4 pm (Li Ka Shing Center Room LK205)
Neal Parikh, Computer Science Department, Stanford University

A Whole-Cell Computational Model Predicts Phenotype from Genotype

  • Tuesday July 10th at 4 pm (Li Ka Shing Center Room LK209)
    Jonathan Karr, Biophysics Department, Stanford University

A Computational Framework for De Novo Cell Cycle Modeling and Mechanistic Cancer Drug Profiling

Tuesday June 12th at 415 pm (Li Ka Shing Center Room LK208)
Tiffany Chen, Biomedical Informatics Department, Stanford University

Linking Disease Associations with Regulatory Information in the Human Genome using ENCODE data

Tuesday May 15th at 4 pm (Li Ka Shing Center Room LK208)
Marc Schaub, Computer Science Department, Stanford University

Clustering Genomic Datasets without Prior Knowledge of Custer Number using AutoSOME

Tuesday April 10th at 4 pm (Li Ka Shing Center Room LK208)
Aaron Newman, Stem Cell Institute, Stanford University

A framework for normalizing RNA-seq data to increase the power of eQTL detection

Tuesday March 13th at 4 pm (Li Ka Shing Center Room LK205)
Sara Mostafavi, Computer Science Department, Stanford University

Modeling, analysis, and treatments for the HER-AKT pathway in cancers that overexpress HER2

Tuesday February 7th at 4 pm (Li Ka Shing Center Room LK308)
Solomon Itani, Electrical Engineering & Computer Science, UC Berkeley

The prognostic landscape of genes and infiltrating immune cells across human cancers

Tuesday, August 25, 2015 at 3:00pm (Clark, Room S363)
Andrew Gentles, Stanford University

Leveraging tumor lineage trees to predict and genotype somatic structural variations using paired-end sequencing

Tuesday, August 11, 2015 at 3:00pm (Clark, Room S363)
Iman Hajirasouliha, Stanford University